PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000265073
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 541aa    MW: 59818.4 Da    PI: 7.8309
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000265073genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.97.5e-3133744328128
            NAM  28 leleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkge 117
                     +++ + ++v  y++ P++   +     k+++  ++wyfF++rd+ky++g+r++ra+ +gyWkatg dkev+s++g++vg +k Lvfy+g+ pkg 
  MDP0000265073 337 ASVTIITQQVASYSLSPNKQSpAqggqeKYEKYGDKWYFFTPRDRKYRNGSRPKRAAGDGYWKATGADKEVKSSDGAVVGSRKALVFYRGKPPKGD 432
                    333335677899999999985334665555555669************************************************************ PP

            NAM 118 ktdWvmheyrl 128
                    kt+W+mhe+++
  MDP0000265073 433 KTNWIMHEFKV 443
                    *********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF517355.94E-643318IPR016040NAD(P)-binding domain
Gene3DG3DSA:3.40.50.7202.4E-588315IPR016040NAD(P)-binding domain
CDDcd089585.31E-1529301No hitNo description
PfamPF013703.1E-209246IPR001509NAD-dependent epimerase/dehydratase, N-terminal domain
PROSITE profilePS5100531.606297465IPR003441NAC domain
PfamPF023652.5E-14333442IPR003441NAC domain
SuperFamilySSF1019412.22E-29369448IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0050662Molecular Functioncoenzyme binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MSSGEGKVVC VTGASGYIAS WLVKLLLQRG YTVKASIRDP NDPTKTEHLH ALDGAQDRLQ  60
LFKANLLEXG SFDSAVEGCE GVFHTASPFY HDVTDPKAEL LEPAVKGTLN VLNSCAKSPS  120
IKRVVLTSSI AAVAYNGKPR TPDVVIDETW FTDPDVCKES KLWYVLSKTL AEDAAWKFVK  180
EKGIDLVTIN PAMVIGPLLQ PTLNTSAAAV LNVIKGARTF PNASFGWINV KDVANAHIQA  240
FESPTASGRY CLVETVAHFS EVVRILRELH PTLQLPEKCA DDKPFVPTYQ VSKEKAKXLG  300
VEFIPLDVSL KETVESLKEK ESPTMEPVEQ SHPDHKASVT IITQQVASYS LSPNKQSPAQ  360
GGQEKYEKYG DKWYFFTPRD RKYRNGSRPK RAAGDGYWKA TGADKEVKSS DGAVVGSRKA  420
LVFYRGKPPK GDKTNWIMHE FKVKDSPVRS RRGENDMRSV EAASMNAGSY YANMGYSQPI  480
CVRPPSMSSE SVLGPYRYID ESTILQDDMM FGMKGFEHSL YSTNNYAGQF SALDHVFPYT  540
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4qtz_A0.063212317Dihydroflavonol-4-reductase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.26250.0bud| cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2903760.0JX290376.1 Pyrus pyrifolia cinnamyl alcohol dehydrogenase 1 (CAD1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008363567.10.0PREDICTED: cinnamoyl-CoA reductase 1-like
SwissprotQ9S9N91e-92CCR1_ARATH; Cinnamoyl-CoA reductase 1
TrEMBLO651520.0O65152_MALDO; Putative cinnamyl alcohol dehydrogenase
STRINGPOPTR_0009s05670.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.14e-31NAC domain containing protein 32